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Machine Learning Research Software in LISP
FTP repository of common list algorithms and datasets for research. [GPL]
http://www.cs.utexas.edu/~ml/ml-progs.html
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What If: Web-based Scientific Discovery
An algorithm engine which will calculate everything from symmetry, torsion angles, polar fraction through protein analysis and bond angles. Online version only. [Free]
http://swift.cmbi.kun.nl/WIWWWI/
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SenseClusters
Programs to cluster similar contexts together using unsupervised knowledge-lean methods for word sense discrimination, email categorization, and name discrimination. Written in Perl. [GNU]
http://senseclusters.sourceforge.net/
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WebMO
Web-based interface to computational chemistry. Has support for Gaussian 94/98/03, GAMESS, MolPro 2002, MOPAC 7/93/200x, NWChem 4.6+, QChem 2.1+, and Tinker 4.2+. Unix or Linux based. [Free]
http://www.webmo.net/
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HMMER: Biosequence Analysis
A tool used to build HMMs from multiple alignments and calculate e-scores. [GPL]
http://hmmer.janelia.org/
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Machine Learning Programs by Peter Clark
A collection of downloadable packages including: KM - The Knowledge Machine, Guiding Inductive Learning with a Qualitative Model, LPE - Lazy Partial Evaluation, and CN2 - Rule induction from examples. [GPL]
http://www.cs.utexas.edu/users/pclark/software/
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PRAPI: Pattern Recognition Application Programmer's Interface
A library for many pattern recognition tasks. The main focus of this package is on image analysis but utilizes a general architecture and XML-based data interchange format. Written in C++ [GPL]
http://www.ee.oulu.fi/~topiolli/cppdocs/
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HMM: Pattern search and discovery
A collection of tools for creating and using HMMs for biological sequences. [AFL]
http://bioweb.pasteur.fr/seqanal/motif/sam-uk.html
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GAlib: Matthew's Genetic Algorithms Library
A toolset of genetic algorithm objects for C++ to perform optimization. Uses any representation and genetic operators. The documentation contains implementation and examples. Nice screenshots. PVM for distributed, parallel implementations. Inclu
http://lancet.mit.edu/ga/
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New Scientific Brainstorming Software for Inventors -- Windows, Mac and Linux
A software developed to help your team brainstorm. Words are replaced programmatically in user's idea sentence with new words from program categories perhaps creating ideas not formerly thought of. Includes word categories. [Commercial]
http://www.paramind.net/pmscientificversion.html
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