Directory: Top/Science/Biology/Taxonomy/Software

Top / Science / Biology / Taxonomy / Software /

Phylo-Win
Graphical color interface for molecular phylogenetic inference. It performs neighbor-joining, parsimony, and maximum likelihood methods and bootstrap with any of them.
http://pbil.univ-lyon1.fr/software/phylowin.html
Univ-lyon1.fr ~ Site Info Whois Trace Route RBL Check

PAML
Phylogenetic analyses of DNA or protein sequences using maximum likelihood.
http://abacus.gene.ucl.ac.uk/software/paml.html
Ucl.ac.uk ~ Site Info Whois Trace Route RBL Check

Mesquite
Experimental, modular software for evolutionary biology, designed to help biologists analyze comparative data about organisms.
http://mesquiteproject.org/mesquite/mesquite.html
Mesquiteproject.org ~ Site Info Whois Trace Route RBL Check

PAUP*
PAUP is the most widely used package for phylogenetic inference, and now implements maximum likelihood and distance methods as well as various forms of parsimony. Powerful and very easy to use, particularly the Mac version.
http://paup.csit.fsu.edu/
Fsu.edu ~ Site Info Whois Trace Route RBL Check

Clann: Software for Supertree Methods
Clann implements a large number of supertree methods for reconstructing phylogenies from sets of input phylogenetic trees.
http://bioinf.may.ie/software/clann/
May.ie ~ Site Info Whois Trace Route RBL Check

MrBayes
Open source software for estimation of phylogenies using Bayesian inference.
http://mrbayes.csit.fsu.edu/
Fsu.edu ~ Site Info Whois Trace Route RBL Check

NONA
Freeware software for phylogenetic analyses using parsimony.
http://www.cladistics.com/aboutNona.htm
Cladistics.com ~ Site Info Whois Trace Route RBL Check

3I - Internet-accessible Interactive Identification
Program to create internet-accessible interactive taxonomic keys.
http://ctap.inhs.uiuc.edu/dmitriev/
Uiuc.edu ~ Site Info Whois Trace Route RBL Check

r8s
Open source software for estimating absolute rates of molecular evolution and divergence times on phylogenetic trees.
http://loco.biosci.arizona.edu/r8s/
Arizona.edu ~ Site Info Whois Trace Route RBL Check